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NORONHA Alberto

Main Referenced Co-authors
THIELE, Ines  (8)
FLEMING, Ronan MT  (6)
HEINKEN, Almut Katrin  (3)
HEIRENDT, Laurent  (3)
Palsson, Bernhard O. (3)
Main Referenced Keywords
Atom mapping (1); AutoMapper (1); Automation (1); bioinformatics (1); biological network visualization (1);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB) (2)
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (1)
Luxembourg Centre for Systems Biomedicine (LCSB): Molecular Systems Physiology (Thiele Group) (1)
Luxembourg Centre for Systems Biomedicine (LCSB): Systems Biochemistry (Fleming Group) (1)
ULHPC - University of Luxembourg: High Performance Computing (1)
Main Referenced Disciplines
Life sciences: Multidisciplinary, general & others (6)
Biochemistry, biophysics & molecular biology (3)
Computer science (2)
Biotechnology (2)
Neurology (1)

Publications (total 12)

The most downloaded
625 downloads
Noronha, A. (2018). DEVELOPMENT OF A COMPUTATIONAL RESOURCE FOR PERSONALIZED DIETARY RECOMMENDATIONS [Doctoral thesis, Unilu - University of Luxembourg]. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/35530 https://hdl.handle.net/10993/35530

The most cited

616 citations (Scopus®)

Heirendt, L., Arreckx, S., Pfau, T., Mendoza, S. N., Richelle, A., Heinken, A. K., Haraldsdottir, H. S., Wachowiak, J., Keating, S. M., Vlasov, V., Magnusdottir, S., Ng, C. Y., Preciat, G., Zagare, A., Chan, S. H. J., Aurich, M. K., Clancy, C. M., Modamio, J., Sauls, J. T., ... Fleming, R. M. T. (2019). Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Nature Protocols, 14 (3), 639-702. doi:10.1038/s41596-018-0098-2 https://hdl.handle.net/10993/39264

Kratochvil, M.* , Heirendt, L.* , Wilken, S. E., Pusa, T., Arreckx, S., Noronha, A., van Aalst, M., Satagopam, V., Ebenhöh, O., Schneider, R., Trefois, C., & Gu, W. (2021). COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinformatics. doi:10.1093/bioinformatics/btab782
Peer reviewed
* These authors have contributed equally to this work.

Heirendt, L., Arreckx, S., Pfau, T., Mendoza, S. N., Richelle, A., Heinken, A. K., Haraldsdottir, H. S., Wachowiak, J., Keating, S. M., Vlasov, V., Magnusdottir, S., Ng, C. Y., Preciat, G., Zagare, A., Chan, S. H. J., Aurich, M. K., Clancy, C. M., Modamio, J., Sauls, J. T., ... Fleming, R. M. T. (2019). Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Nature Protocols, 14 (3), 639-702. doi:10.1038/s41596-018-0098-2
Peer Reviewed verified by ORBi

Noronha, A., Modamio Chamarro, J., Jarosz, Y., Guerard, E., Sompairac, N., Preciat Gonzalez, G. A., Danielsdottir, A. D., Krecke, M., Merten, D., Haraldsdottir, H., Heinken, A. K., Heirendt, L., Magnusdottir, S., Ravcheev, D., Sahoo, S., Gawron, P., Friscioni, L., Garcia Santa Cruz, B., Prendergast, M., ... Thiele, I. (2018). The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Research. doi:10.1093/nar/gky992
Peer Reviewed verified by ORBi

Noronha, A. (2018). DEVELOPMENT OF A COMPUTATIONAL RESOURCE FOR PERSONALIZED DIETARY RECOMMENDATIONS [Doctoral thesis, Unilu - University of Luxembourg]. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/35530

Brunk, E., Sahoo, S., Zielinski, D. C., Altunkaya, A., Drager, A., Mih, N., Gatto, F., Nilsson, A., Preciat Gonzalez, G. A., Aurich, M. K., Prlic, A., Sastry, A., Danielsdottir, A. D., Heinken, A. K., Noronha, A., Rose, P. W., Burley, S. K., Fleming, R. M., Nielsen, J., ... Palsson, B. O. (2018). Recon3D enables a three-dimensional view of gene variation in human metabolism. Nature Biotechnology, 36 (3), 272-281. doi:10.1038/nbt.4072
Peer Reviewed verified by ORBi

Preciat Gonzalez, G. A., El Assal, L., Noronha, A., Thiele, I., Haraldsdottir, H., & Fleming, R. M. (2017). Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D. Journal of Cheminformatics. doi:10.1186/s13321-017-0223-1
Peer Reviewed verified by ORBi

Rhaman, J., Noronha, A., Thiele, I., & Rahman, S. (2017). Leigh Map: A Novel Computational Diagnostic Resource for Mitochondrial Disease. Annals of Neurology. doi:10.1002/ana.24835
Peer Reviewed verified by ORBi

Magnusdottir, S., Heinken, A. K., Kutt, L., Ravcheev, D., Bauer, E., Noronha, A., Greenhalgh, K., Jäger, C., Baginska, J., Wilmes, P., Fleming, R. M., & Thiele, I. (2016). Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota. Nature Biotechnology. doi:10.1038/nbt.3703
Peer Reviewed verified by ORBi

Noronha, A., Danielsdóttir, A. D., Jóhannsson, F., Jónsdóttir, S., Jarlsson, S., Gunnarsson, J. P., Brynjólfsson, S., Gawron, P., Schneider, R., Thiele, I., & Fleming, R. M. (2016). ReconMap: An interactive visualisation of human metabolism. Bioinformatics. doi:10.1093/bioinformatics/btw667
Peer reviewed

Ebrahim, A., Almaas, E., Bauer, E., Bordbar, A., Burgard, A. P., Chang, R. L., Dräger, A., Famili, I., Feist, A. M., Fleming, R. M., Fong, S. S., Hatzimanikatis, V., Herrgård, M. J., Holder, A., Hucka, M., Hyduke, D., Jamshidi, N., Lee, S. Y., Le Novère, N., ... Thiele, I. (2015). Do Genome-scale Models Need Exact Solvers or Clearer Standards? Molecular Systems Biology, 11 (10), 1. doi:10.15252/msb.20156157
Peer Reviewed verified by ORBi

Noronha, A., Vilaça, P., & Rocha, M. (30 December 2014). An integrated network visualization framework towards metabolic engineering applications. BMC Bioinformatics, 15. doi:10.1186/s12859-014-0420-0
Peer Reviewed verified by ORBi

Noronha, A., Vilaça, P., & Rocha, M. (2013). Network Visualization Tools to Enhance Metabolic Engineering Platforms. In 7th International Conference on Practical Applications of Computational Biology & Bioinformatics (pp. 137-144). Springer International Publishing.
Peer reviewed

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