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Profil

ESPINOSA ANGARICA Vladimir

Main Referenced Co-authors
Sancho, Javier (9)
Collado-Vides, Julio (8)
Perez, Abel Gonzalez (4)
Vasconcelos, Ana T. (4)
Contreras-Moreira, Bruno (3)
Main Referenced Keywords
regulon (6); regulatory network (5); gamma-proteobacteria (4); TF-binding-sites prediction (4); TF-binding-site prediction (3);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Computational Biology (Del Sol Group) (1)
ULHPC - University of Luxembourg: High Performance Computing (1)
Main Referenced Disciplines
Biochemistry, biophysics & molecular biology (20)
Life sciences: Multidisciplinary, general & others (1)

Publications (total 21)

The most downloaded
365 downloads
del Sol Mesa, A., Zickenrott, S., & Espinosa Angarica, V. (14 January 2016). Prediction of disease-gene-drug relationships following a differential network analysis. Cell Death and Disease, 7, 2040. doi:10.1038/cddis.2015.393 https://hdl.handle.net/10993/23200

The most cited

93 citations (Scopus®)

Lopez-Gomollon, S., Hernandez, J. A., Pellicer, S., Espinosa Angarica, V., Peleato, M. L., & Fillat, M. F. (2007). Cross-talk between iron and nitrogen regulatory networks in anabaena (Nostoc) sp. PCC 7120: identification of overlapping genes in FurA and NtcA regulons. Journal of Molecular Biology, 374 (1), 267-81. doi:10.1016/j.jmb.2007.09.010 https://hdl.handle.net/10993/16684

Espinosa Angarica, V., & del Sol Mesa, A. (August 2016). Modeling heterogeneity in the pluripotent state: A promising strategy for improving the efficiency and fidelity of stem cell differentiation. BioEssays, 38 (8). doi:10.1002/bies.201600103
Peer Reviewed verified by ORBi

del Sol Mesa, A., Zickenrott, S., & Espinosa Angarica, V. (14 January 2016). Prediction of disease-gene-drug relationships following a differential network analysis. Cell Death and Disease, 7, 2040. doi:10.1038/cddis.2015.393
Peer Reviewed verified by ORBi

Espinosa Angarica, V., Orozco, M., & Sancho, J. (10 January 2016). Exploring the Complete Mutational Space of the LDL receptor LA5 Domain Using Molecular Dynamics: Linking SNPs with Disease Phenotypes in Familial Hypercholesterolemia. Human Molecular Genetics, 25 (6), 1233-1246. doi:10.1093/hmg/ddw004
Peer Reviewed verified by ORBi

Okawa, S., Espinosa Angarica, V., Lemischka, I., Moore, K., & del Sol Mesa, A. (2015). A differential network analysis approach for lineage specifier prediction in stem cell subpopulations. NPJ Systems Biology and Applications. doi:10.1038/npjsba.2015.12
Peer reviewed

Gonzalez, A., Espinosa Angarica, V., Sancho, J., & Fillat, M. F. (2014). The FurA regulon in Anabaena sp. PCC 7120: in silico prediction and experimental validation of novel target genes. Nucleic Acids Research, 42 (8), 4833-46. doi:10.1093/nar/gku123
Peer Reviewed verified by ORBi

Martinez-Olivan, J., Rozado-Aguirre, Z., Arias-Moreno, X., Espinosa Angarica, V., Velazquez-Campoy, A., & Sancho, J. (2014). Low-density lipoprotein receptor is a calcium/magnesium sensor - role of LR4 and LR5 ion interaction kinetics in low-density lipoprotein release in the endosome. The FEBS journal, 281 (11), 2638-58. doi:10.1111/febs.12811
Peer reviewed

Espinosa Angarica, V., Angulo, A., Giner, A., Losilla, G., Ventura, S., & Sancho, J. (2014). PrionScan: an online database of predicted prion domains in complete proteomes. BMC Genomics, 15, 102. doi:10.1186/1471-2164-15-102
Peer Reviewed verified by ORBi

Espinosa Angarica, V., Ventura, S., & Sancho, J. (2013). Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains. BMC Genomics, 14, 316. doi:10.1186/1471-2164-14-316
Peer Reviewed verified by ORBi

Martinez-Julvez, M., Rojas, A. L., Olekhnovich, I., Espinosa Angarica, V., Hoffman, P. S., & Sancho, J. (2012). Structure of RdxA--an oxygen-insensitive nitroreductase essential for metronidazole activation in Helicobacter pylori. The FEBS journal, 279 (23), 4306-17. doi:10.1111/febs.12020
Peer reviewed

Espinosa Angarica, V., & Sancho, J. (2012). Protein dynamics governed by interfaces of high polarity and low packing density. PLoS ONE, 7 (10), 48212. doi:10.1371/journal.pone.0048212
Peer Reviewed verified by ORBi

Ayuso-Tejedor, S., Espinosa Angarica, V., Bueno, M., Campos, L. A., Abian, O., Bernado, P., Sancho, J., & Jimenez, M. A. (2010). Design and structure of an equilibrium protein folding intermediate: a hint into dynamical regions of proteins. Journal of Molecular Biology, 400 (4), 922-34. doi:10.1016/j.jmb.2010.05.050
Peer Reviewed verified by ORBi

Contreras-Moreira, B., Sancho, J., & Espinosa Angarica, V. (2010). Comparison of DNA binding across protein superfamilies. Proteins, 78 (1), 52-62. doi:10.1002/prot.22525
Peer Reviewed verified by ORBi

Perez, A. G., Espinosa Angarica, V., Collado-Vides, J., & Vasconcelos, A. T. R. (2009). From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters. BMC Molecular Biology, 10, 92. doi:10.1186/1471-2199-10-92
Peer Reviewed verified by ORBi

Espinosa Angarica, V., Perez, A. G., Vasconcelos, A. T., Collado-Vides, J., & Contreras-Moreira, B. (2008). Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9, 436. doi:10.1186/1471-2105-9-436
Peer Reviewed verified by ORBi

Lozada-Chavez, I., Espinosa Angarica, V., Collado-Vides, J., & Contreras-Moreira, B. (2008). The role of DNA-binding specificity in the evolution of bacterial regulatory networks. Journal of Molecular Biology, 379 (3), 627-43. doi:10.1016/j.jmb.2008.04.008
Peer Reviewed verified by ORBi

Gonzalez Perez, A. D., Gonzalez Gonzalez, E., Espinosa Angarica, V., Vasconcelos, A. T. R., & Collado-Vides, J. (2008). Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria. BMC Genomics, 9, 128. doi:10.1186/1471-2164-9-128
Peer Reviewed verified by ORBi

Lopez-Gomollon, S., Hernandez, J. A., Pellicer, S., Espinosa Angarica, V., Peleato, M. L., & Fillat, M. F. (2007). Cross-talk between iron and nitrogen regulatory networks in anabaena (Nostoc) sp. PCC 7120: identification of overlapping genes in FurA and NtcA regulons. Journal of Molecular Biology, 374 (1), 267-81. doi:10.1016/j.jmb.2007.09.010
Peer Reviewed verified by ORBi

Perez, A. G., Espinosa Angarica, V., Vasconcelos, A. T. R., & Collado-Vides, J. (2007). Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes. Nucleic Acids Research, 35 (Database issue), 132-6. doi:10.1093/nar/gkl800
Peer Reviewed verified by ORBi

Espinosa Angarica, V., Gonzalez, A. D., Vasconcelos, A. T., Huerta, A. M., & Collado-Vides, J. (2005). Comparative studies of transcriptional regulation mechanisms in a group of eight gamma-proteobacterial genomes. Journal of molecular biology, 354 (1), 184-99. doi:10.1016/j.jmb.2005.09.037
Peer reviewed

Guia, M. H., Perez, A. G., Espinosa Angarica, V., Vasconcelos, A. T., & Collado-Vides, J. (2005). Complementing computationally predicted regulatory sites in Tractor_DB using a pattern matching approach. In silico biology, 5 (2), 209-19.
Peer reviewed

Gonzalez, A. D., Espinosa Angarica, V., Vasconcelos, A. T., Perez-Rueda, E., & Collado-Vides, J. (2005). TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes. Nucleic Acids Research, 33 (Database issue), 98-102. doi:10.1093/nar/gki054
Peer Reviewed verified by ORBi

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