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Learning Two-input Linear and Nonlinear Analog Functions with a Simple Chemical System
Banda, Peter; Teuscher, Christof
2014In Ibarra, Oscar H.; Kari, Lila; Kopecki, Steffen (Eds.) Unconventional Computing and Natural Computing Conference
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Keywords :
chemical perceptron; analog perceptron; supervised learning; chemical computing; RNMSE; linear function; quadratic function
Abstract :
[en] The current biochemical information processing systems behave in a pre-determined manner because all features are defined during the design phase. To make such unconventional computing systems reusable and programmable for biomedical applications, adaptation, learning, and self-modification based on external stimuli would be highly desirable. However, so far, it has been too challenging to implement these in wet chemistries. In this paper we extend the chemical perceptron, a model previously proposed by the authors, to function as an analog instead of a binary system. The new analog asymmetric signal perceptron learns through feedback and supports Michaelis-Menten kinetics. The results show that our perceptron is able to learn linear and nonlinear (quadratic) functions of two inputs. To the best of our knowledge, it is the first simulated chemical system capable of doing so. The small number of species and reactions and their simplicity allows for a mapping to an actual wet implementation using DNA-strand displacement or deoxyribozymes. Our results are an important step toward actual biochemical systems that can learn and adapt.
Disciplines :
Computer science
Chemistry
Author, co-author :
Banda, Peter ;  Portland State University > Department of Computer Science
Teuscher, Christof
External co-authors :
no
Language :
English
Title :
Learning Two-input Linear and Nonlinear Analog Functions with a Simple Chemical System
Publication date :
2014
Event name :
The 13th International Conference on Unconventional Computation and Natural Computation
Event place :
London, Canada
Event date :
from 14-07-2014 to 18-07-2014
Audience :
International
Main work title :
Unconventional Computing and Natural Computing Conference
Editor :
Ibarra, Oscar H.
Kari, Lila
Kopecki, Steffen
Publisher :
Springer International Publishing, Switzerland
ISBN/EAN :
978-3-319-08122-9
Collection name :
Lecture Notes in Computer Science, 8553
Pages :
14-26
Peer reviewed :
Peer reviewed
Focus Area :
Computational Sciences
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since 17 March 2016

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