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See detailMixed Reality - Potential and Pitfalls for Representing History
Botev, Jean UL

Presentation (2019)

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See detailOntology-based metabolomics data integration with quality control
Buendia, Patricia; Bradley, Ray M.; Taylor, Thomas J. et al

in Bioanalysis (2019), 11(12), 1139-1154

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See detailMt Sinai Special Seminar: Finding Small Molecules in Big Data
Schymanski, Emma UL

Presentation (2019)

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See detailChemInChIformatics: IUPAC's Role in the Environmental Monitoring Revolution
Schymanski, Emma UL

Scientific Conference (2019)

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See detailEnvironmental Cheminformatics to Identify Unknown Chemicals and their Effects
Schymanski, Emma UL

Scientific Conference (2019)

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See detailIdentifying Small Molecules in Untargeted Exposomics Data: A case study of Thirdhand Smoke
Schymanski, Emma UL; Torres, Sonia; Ramirez, Noelia

Scientific Conference (2019)

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See detailSWEMSA 2019: Finding Small Molecules in Big Data
Schymanski, Emma UL

Presentation (2019)

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See detailh- and p-adaptivity driven by recovery and residual-based error estimators for PHT-splines applied to time-harmonic acoustics
Videla, Javier; Anitescu, Cosmin; Khajah, Tahsin et al

in Computers and Mathematics with Applications (2018), 77(9), 2369-2395

In this work, we demonstrate the application of PHT-splines for time-harmonic acoustic problems, modeled by the Helmholtz equation. Solutions of the Helmholtz equation have two features: global ... [more ▼]

In this work, we demonstrate the application of PHT-splines for time-harmonic acoustic problems, modeled by the Helmholtz equation. Solutions of the Helmholtz equation have two features: global oscillations associated with the wave number and local gradients caused by geometrical irregularities. We show that after a sufficient number of degrees of freedom is used to approximate global oscillations, adaptive refinement can capture local features of the solution. We compare residual-based and recovery-based error estimators and investigate the performance of -refinement. The simulations are done in the context of recently introduced Geometry Independent Field approximaTion (GIFT), where PHT-splines are only used to approximate the solution, while the computational domain is parameterized with NURBS. This approach builds on the natural adaptation ability of PHT-splines and avoids the re-parameterization of the NURBS geometry during the solution refinement process. [less ▲]

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See detailSeparating the influence of electric charges in magnetic force microscopy images of inhomogeneous metal samples
Arenas, Mónica P.; Martin Lanzoni, Evandro UL; Pacheco, Clara J. et al

in Journal of Magnetism and Magnetic Materials (2018), 446

In this study, we investigate artifacts arising from electric charges present in magnetic force microscopy images. Therefore, we use two austenitic steel samples with different microstructural conditions ... [more ▼]

In this study, we investigate artifacts arising from electric charges present in magnetic force microscopy images. Therefore, we use two austenitic steel samples with different microstructural conditions. Furthermore, we examine the influence of the surface preparation, like etching, in magnetic force images. Using Kelvin probe force microscopy we can quantify the charges present on the surface. Our results show that electrical charges give rise to a signature in the magnetic force microscopy, which is indistinguishable from a magnetic signal. Our results on two differently aged steel samples demonstrate that the magnetic force microscopy images need to be interpreted with care and must be corrected due to the influence of electrical charges present. We discuss three approaches, how to identify these artifacts – parallel acquisition of magnetic force and electric force images on the same position, sample surface preparation to decrease the presence of charges and inversion of the magnetic polarization in two succeeding measurement. [less ▲]

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See detailPredicting Ligand-Free Cell Attachment on Next-Generation Cellulose–Chitosan Hydrogels
Johns, Marcus A.; Bae, Yongho; Guimarães, Francisco E. G. et al

in ACS Omega (2018), 3(1), 937--945

There is a growing appreciation that engineered biointerfaces can regulate cell behaviors, or functions. Most systems aim to mimic the cell-friendly extracellular matrix environment and incorporate ... [more ▼]

There is a growing appreciation that engineered biointerfaces can regulate cell behaviors, or functions. Most systems aim to mimic the cell-friendly extracellular matrix environment and incorporate protein ligands; however, the understanding of how a ligand-free system can achieve this is limited. Cell scaffold materials comprised of interfused chitosan–cellulose hydrogels promote cell attachment in ligand-free systems, and we demonstrate the role of cellulose molecular weight, MW, and chitosan content and MW in controlling material properties and thus regulating cell attachment. Semi-interpenetrating network (SIPN) gels, generated from cellulose/ionic liquid/cosolvent solutions, using chitosan solutions as phase inversion solvents, were stable and obviated the need for chemical coupling. Interface properties, including surface zeta-potential, dielectric constant, surface roughness, and shear modulus, were modified by varying the chitosan degree of polymerization and solution concentration, as well as the source of cellulose, creating a family of cellulose–chitosan SIPN materials. These features, in turn, affect cell attachment onto the hydrogels and the utility of this ligand-free approach is extended by forecasting cell attachment using regression modeling to isolate the effects of individual parameters in an initially complex system. We demonstrate that increasing the charge density, and/or shear modulus, of the hydrogel results in increased cell attachment. [less ▲]

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See detailCovalent functionalization of graphene oxide with D-mannose: evaluating the hemolytic effect and protein corona formation
Sousa, Marcelo De; Martins, Carlos H. Z.; Franqui, Lidiane S. et al

in Journal of Materials Chemistry B (2018), 6(18), 2803--2812

In this work, graphene oxide (GO) was covalently functionalized with D-mannose (man-GO) using mannosylated ethylenediamine. XPS (C1s and N1s) confirmed the functionalization of GO through the binding ... [more ▼]

In this work, graphene oxide (GO) was covalently functionalized with D-mannose (man-GO) using mannosylated ethylenediamine. XPS (C1s and N1s) confirmed the functionalization of GO through the binding energies at 288.2 eV and 399.8 eV, respectively, which are attributed to the amide bond. ATR-FTIR spectroscopy showed an increase in the amine bond intensity, at 1625 cm−1 (stretching CO), after the functionalization step. Furthermore, the man-GO toxicity to human red blood cells (hemolysis) and its nanobiointeractions with human plasma proteins (hard corona formation) were evaluated. The mannosylation of GO drastically reduced its toxicity to red blood cells. SDS-PAGE analysis showed that the mannosylation process of GO also drastically reduced the amount of the proteins in the hard corona. Additionally, proteomics analysis by LC–MS/MS revealed 109 proteins in the composition of the man-GO hard corona. Finally, this work contributes to future biomedical applications of graphene-based materials functionalized with active biomolecules. [less ▲]

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See detailFinding Small Molecules in Big Data - Analytica Munich
Schymanski, Emma UL; Williams, Antony J.

Scientific Conference (2018)

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See detailCommunity Resources Connecting Chemistry and Toxicity Knowledge to Environmental Observations
Schymanski, Emma UL; Williams, Antony J.

Scientific Conference (2018)

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See detailModulating cell response on cellulose surfaces; tunable attachment and scaffold mechanics
Courtenay, James C.; Deneke, Christoph; Martin Lanzoni, Evandro UL et al

in Cellulose (2017)

Combining surface chemical modification of cellulose to introduce positively charged trimethylammonium groups by reaction with glycidyltrimethylammonium chloride (GTMAC) allowed for direct attachment of ... [more ▼]

Combining surface chemical modification of cellulose to introduce positively charged trimethylammonium groups by reaction with glycidyltrimethylammonium chloride (GTMAC) allowed for direct attachment of mammalian MG-63 cells, without addition of protein modifiers, or ligands. Very small increases in the surface charge resulted in significant increases in cell attachment: at a degree of substitution (DS) of only 1.4\%, MG-63 cell attachment was \textgreater 90 compared to tissue culture plastic, whereas minimal attachment occurred on unmodified cellulose. Cell attachment plateaued above DS of ca. 1.85 reflecting a similar trend in surface charge, as determined from ζ-potential measurements and capacitance coupling (electric force microscopy). Cellulose film stiffness was modulated by cross linking with glyoxal (0.3–2.6 degree of crosslinking) to produce a range of materials with surface shear moduli from 76 to 448 kPa (measured using atomic force microscopy). Cell morphology on these materials could be regulated by tuning the stiffness of the scaffolds. Thus, we report tailored functionalised biomaterials based on cationic cellulose that can be tuned through surface reaction and glyoxal crosslinkin+g, to influence the attachment and morphology of cells. These scaffolds are the first steps towards materials designed to support cells and to regulate cell morphology on implanted biomaterials using only scaffold and cells, i.e. without added adhesion promoters. [less ▲]

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See detailSurface modified cellulose scaffolds for tissue engineering
Courtenay, James C.; Johns, Marcus A.; Galembeck, Fernando et al

in Cellulose (2016)

We report the ability of cellulose to support cells without the use of matrix ligands on the surface of the material, thus creating a two-component system for tissue engineering of cells and materials ... [more ▼]

We report the ability of cellulose to support cells without the use of matrix ligands on the surface of the material, thus creating a two-component system for tissue engineering of cells and materials. Sheets of bacterial cellulose, grown from a culture medium containing Acetobacter organism were chemically modified with glycidyltrimethylammonium chloride or by oxidation with sodium hypochlorite in the presence of sodium bromide and 2,2,6,6-tetramethylpipiridine 1-oxyl radical to introduce a positive, or negative, charge, respectively. This modification process did not degrade the mechanical properties of the bulk material, but grafting of a positively charged moiety to the cellulose surface (cationic cellulose) increased cell attachment by 70 compared to unmodified cellulose, while negatively charged, oxidised cellulose films (anionic cellulose), showed low levels of cell attachment comparable to those seen for unmodified cellulose. Only a minimal level of cationic surface derivitisation (ca 3 degree of substitution) was required for increased cell attachment and no mediating proteins were required. Cell adhesion studies exhibited the same trends as the attachment studies, while the mean cell area and aspect ratio was highest on the cationic surfaces. Overall, we demonstrated the utility of positively charged bacterial cellulose in tissue engineering in the absence of proteins for cell attachment. [less ▲]

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See detailDetermination of High Frequency Dielectric Constant and Surface Potential of Graphene Oxide and Influence of Humidity by KPFM.
Salomão, Francisco Carneiro; Martin Lanzoni, Evandro UL; Costa, Carlos et al

in Langmuir (2015)

We use Kelvin probe force microscopy (KPFM) and capacitance coupling (dC/dz) to study the electrical properties of graphene oxide (GO). We propose using the dC/dz signal to probe the high frequency ... [more ▼]

We use Kelvin probe force microscopy (KPFM) and capacitance coupling (dC/dz) to study the electrical properties of graphene oxide (GO). We propose using the dC/dz signal to probe the high frequency dielectric constant of mono- and few-layer GO. Our measurements suggest that the dynamic dielectric constant of GO is on the order of εGO ? 3.0 ε0, in the high frequency limit, and independent of the number of GO layers. The measurements are performed at a humidity controlled environment (5 of humidity). The effects of increasing humidity on both the dC/dz and KPFM measurements are analyzed. [less ▲]

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See detailAdhesive and Reinforcing Properties of Soluble Cellulose: A Repulpable Adhesive for Wet and Dry Cellulosic Substrates
Ferreira, Elisa UL; Martin Lanzoni, Evandro UL; Costa, Carlos A. R. et al

in ACS Applied Materials Interfaces (2015), 7(33), 18750--18758

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