Reference : The Microbiome Modeling Toolbox: from microbial interactions to personalized microbia...

	Document type :	Scientific journals : Article
	Discipline(s) :	Life sciences : Microbiology Life sciences : Multidisciplinary, general & others
	Focus Areas :	Computational Sciences; Systems Biomedicine
	To cite this reference:	http://hdl.handle.net/10993/37866

Title :	The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities
Language :	English
Author, co-author :	Baldini, Federico [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
	Heinken, Almut Katrin [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
	Heirendt, Laurent [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
	Magnusdottir, Stefania []
	Fleming, Ronan [Leiden Academic Centre for Drug Research > LACDR/Analytical Biosciences]
	Thiele, Ines [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Publication date :	21-Nov-2018
Journal title :	Bioinformatics
Publisher :	Oxford University Press
Special issue title :	The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities
Peer reviewed :	Yes (verified by ORBilu)
Audience :	International
ISSN :	1367-4803
e-ISSN :	1367-4811
City :	Oxford
Country :	United Kingdom
Abstract :	[en] The application of constraint-based modeling to functionally analyze metagenomic data has been limited so far, partially due to the absence of suitable toolboxes. To address this gap, we created a comprehensive toolbox to model i) microbe-microbe and host-microbe metabolic interactions, and ii) microbial communities using microbial genome-scale metabolic reconstructions and metagenomic data. The Microbiome Modeling Toolbox extends the functionality of the COBRA Toolbox. The Microbiome Modeling Toolbox and the tutorials at https://git.io/microbiomeModelingToolbox.
Permalink :	http://hdl.handle.net/10993/37866
DOI :	10.1093/bioinformatics/bty941

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