Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.; Ostaszewski, Marek ; et alin NPJ systems biology and applications (2018), 4 The development of computational approaches in systems biology has reached a state of maturity that allows their transition to systems medicine. Despite this progress, intuitive visualisation and context ... [more ▼] The development of computational approaches in systems biology has reached a state of maturity that allows their transition to systems medicine. Despite this progress, intuitive visualisation and context-dependent knowledge representation still present a major bottleneck. In this paper, we describe the Disease Maps Project, an effort towards a community-driven computationally readable comprehensive representation of disease mechanisms. We outline the key principles and the framework required for the success of this initiative, including use of best practices, standards and protocols. We apply a modular approach to ensure efficient sharing and reuse of resources for projects dedicated to specific diseases. Community-wide use of disease maps will accelerate the conduct of biomedical research and lead to new disease ontologies defined from mechanism-based disease endotypes rather than phenotypes. [less ▲] Detailed reference viewed: 177 (20 UL)![]() Systems of Interacting Argumentation NetworksGabbay, Dov M. ![]() in Journal of Logics and their Applications (2014) Detailed reference viewed: 33 (0 UL) Systems proteomics of liver mitochondria function.Williams, Evan ; ; et alin Science (New York, N.Y.) (2016), 352(6291), 0189 Recent improvements in quantitative proteomics approaches, including Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH-MS), permit reproducible large-scale protein measurements across ... [more ▼] Recent improvements in quantitative proteomics approaches, including Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH-MS), permit reproducible large-scale protein measurements across diverse cohorts. Together with genomics, transcriptomics, and other technologies, transomic data sets can be generated that permit detailed analyses across broad molecular interaction networks. Here, we examine mitochondrial links to liver metabolism through the genome, transcriptome, proteome, and metabolome of 386 individuals in the BXD mouse reference population. Several links were validated between genetic variants toward transcripts, proteins, metabolites, and phenotypes. Among these, sequence variants in Cox7a2l alter its protein's activity, which in turn leads to downstream differences in mitochondrial supercomplex formation. This data set demonstrates that the proteome can now be quantified comprehensively, serving as a key complement to transcriptomics, genomics, and metabolomics--a combination moving us forward in complex trait analysis. [less ▲] Detailed reference viewed: 49 (2 UL) Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut.Heinken, Almut Katrin ; Sahoo, Swagatika ; Fleming, Ronan MT et alin Gut microbes (2013), 4(1), 28-40 The human gut microbiota consists of ten times more microorganisms than there are cells in our body, processes otherwise indigestible nutrients, and produces important energy precursors, essential amino ... [more ▼] The human gut microbiota consists of ten times more microorganisms than there are cells in our body, processes otherwise indigestible nutrients, and produces important energy precursors, essential amino acids, and vitamins. In this study, we assembled and validated a genome-scale metabolic reconstruction of Bacteroides thetaiotaomicron (iAH991), a prominent representative of the human gut microbiota, consisting of 1488 reactions, 1152 metabolites, and 991 genes. To create a comprehensive metabolic model of host-microbe interactions, we integrated iAH991 with a previously published mouse metabolic reconstruction, which was extended for intestinal transport and absorption reactions. The two metabolic models were linked through a joint compartment, the lumen, allowing metabolite exchange and providing a route for simulating different dietary regimes. The resulting model consists of 7239 reactions, 5164 metabolites, and 2769 genes. We simultaneously modeled growth of mouse and B. thetaiotaomicron on five different diets varying in fat, carbohydrate, and protein content. The integrated model captured mutually beneficial cross-feeding as well as competitive interactions. Furthermore, we identified metabolites that were exchanged between the two organisms, which were compared with published metabolomics data. This analysis resulted for the first time in a comprehensive description of the co-metabolism between a host and its commensal microbe. We also demonstrate in silico that the presence of B. thetaiotaomicron could rescue the growth phenotype of the host with an otherwise lethal enzymopathy and vice versa. This systems approach represents a powerful tool for modeling metabolic interactions between a gut microbe and its host in health and disease. [less ▲] Detailed reference viewed: 293 (25 UL) A systems-wide understanding of photosynthetic acclimation in algae and higher plants; ; et al in Journal of Experimental Botany (2017), 68(11), 26672681 The ability of phototrophs to colonise different environments relies on robust protection against oxidative stress, a critical requirement for the successful evolutionary transition from water to land ... [more ▼] The ability of phototrophs to colonise different environments relies on robust protection against oxidative stress, a critical requirement for the successful evolutionary transition from water to land. Photosynthetic organisms have developed numerous strategies to adapt their photosynthetic apparatus to changing light conditions in order to optimise their photosynthetic yield, which is crucial for life on Earth to exist. Photosynthetic acclimation is an excellent example of the complexity of biological systems, where highly diverse processes, ranging from electron excitation over protein protonation to enzymatic processes coupling ion gradients with biosynthetic activity, interact on drastically different timescales from picoseconds to hours. Efficient functioning of the photosynthetic apparatus and its protection is paramount for efficient downstream processes, including metabolism and growth. Modern experimental techniques can be successfully integrated with theoretical and mathematical models to promote our understanding of underlying mechanisms and principles. This review aims to provide a retrospective analysis of multidisciplinary photosynthetic acclimation research carried out by members of the Marie Curie Initial Training Project, AccliPhot, placing the results in a wider context. The review also highlights the applicability of photosynthetic organisms for industry, particularly with regards to the cultivation of microalgae. It intends to demonstrate how theoretical concepts can successfully complement experimental studies broadening our knowledge of common principles in acclimation processes in photosynthetic organisms, as well as in the field of applied microalgal biotechnology. [less ▲] Detailed reference viewed: 97 (9 UL) SYSTOMONAS — an integrated database for systems biology analysis of Pseudomonas; ; et al in Nucleic Acids Research (2007) Detailed reference viewed: 98 (1 UL) SzLB – Skala zur Lebensbewertung (SLB).Ferring, Dieter ; ; in Zeitschrift für Differentielle und Diagnostische Psychologie (1996), 17(3) Detailed reference viewed: 194 (0 UL) Sztuczne życie zmiennokształtnychLengiewicz, Jakub ; Diverse speeches and writings (2021) Detailed reference viewed: 32 (1 UL) T cell immunosenescence after early life adversity: association with cytomegalovirus infection.; ; et al in Frontiers in Immunology (2017), 8 Early life adversity (ELA) increases the risk for multiple age-related diseases, such as diabetes type 2 and cardiovascular disease. As prevalence is high, ELA poses a major and global public health ... [more ▼] Early life adversity (ELA) increases the risk for multiple age-related diseases, such as diabetes type 2 and cardiovascular disease. As prevalence is high, ELA poses a major and global public health problem. Immunosenescence, or aging of the immune system, has been proposed to underlie the association between ELA and long-term health consequences. However, it is unclear what drives ELA-associated immunosenescence and which cells are primarily affected. We investigated different biomarkers of immunosenescence in a healthy subset of the EpiPath cohort. Participants were either parent-reared (Ctrl, n = 59) or had experienced separation from their parents in early childhood and were subsequently adopted (ELA, n = 18). No difference was observed in telomere length or in methylation levels of age-related CpGs in whole blood, containing a heterogeneous mixture of immune cells. However, when specifically investigating T cells, we found a higher expression of senescence markers (CD57) in ELA. In addition, senescent T cells (CD57+) in ELA had an increased cytolytic potential compared to senescent cells in controls. With a mediation analysis we demonstrated that cytomegalovirus (CMV) infection, which is an important driving force of immunosenescence, largely accounted for elevated CD57 expression observed in ELA. Leukocyte telomere length may obscure cell-specific immunosenescence; here, we demonstrated that the use of cell surface markers of senescence can be more informative. Our data suggest that ELA may increase the risk of CMV infection in early childhood, thereby mediating the effect of ELA on T cell-specific immunosenescence. Thus, future studies should include CMV as a confounder or selectively investigate CMV seronegative cohorts. [less ▲] Detailed reference viewed: 152 (1 UL) T wie TrottelHeimböckel, Dieter ![]() Article for general public (2012) Detailed reference viewed: 74 (0 UL)![]() T(H)INK : Development of an intelligence test for primary school children.Baudson, Tanja Gabriele ; Scientific Conference (2010) Detailed reference viewed: 44 (2 UL) (T)Apping the linguistic landscape. Methodological challenges and the scientific potential of a citizen science approach to the study of social semioticsPurschke, Christoph ![]() in Linguistic Landscape (2017), 3(3), This article explores methodological challenges and scientific perspectives of a citizen science approach to linguistic landscapes research. Starting from the outline of a disciplinary landscape, the text ... [more ▼] This article explores methodological challenges and scientific perspectives of a citizen science approach to linguistic landscapes research. Starting from the outline of a disciplinary landscape, the text first discusses development strategies and practical implementation of crowdsourcing via mobile applications as means to data collection in two participatory research projects. The comparison highlights the complex trade-off between empirical benefits and methodological drawbacks in relation to mobile app setups for crowdsourcing. In a second step, the use of crowdsourcing technology is embedded in a methodological framework for a citizen science approach to the study of social semiotics and discussed against the background of five guiding principles: participatory research, lifeworld orientation, societal engagement, computational analysis, and open research practice. The discussion points out that a citizen science approach brings about numerous opportunities as well as substantial challenges for academic practice in terms of a democratization, social embedding, and opening of research activities. [less ▲] Detailed reference viewed: 163 (4 UL) T-S Fuzzy Contact State Recognition for Compliant Motion Robotic Tasks Using Gravitational Search-Based Clustering AlgorithmJasim, Ibrahim ; Plapper, Peter ![]() in 2013 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE 2013) (2013, July) In this paper, we address the problem of contact state recognition for compliant motion robotic systems. The wrench (Cartesian forces and torques) and pose (position and orientation) of the manipulated ... [more ▼] In this paper, we address the problem of contact state recognition for compliant motion robotic systems. The wrench (Cartesian forces and torques) and pose (position and orientation) of the manipulated object in different Contact Formations (CFs) are firstly captured during a certain task execution. Then for each CF, we develop an efficient Takagi- Sugeno (T-S) fuzzy inference system that can model that specific CF using the available input (wrench and pose) - output (the desired model output for each CF) data. The antecedent part parameters are computed using the Gravitational Search- based Fuzzy Clustering Algorithm (GS- FCA) and the consequent parts parameters are tuned by the Least Mean Square (LMS). Excellent mapping and hence recognition capabilities can be expected from the suggested scheme. In order to validate the approach; experimental test stand is built which is composed of a KUKA Light Weight Robot (LWR) manipulating a cube rigid object that interacts with an environment composed of three orthogonal planes. The manipulated object is rigidly attached to the robot arm. The robot is programmed, by a human operator, to move in different CFs and for each CF, the wrench and pose readings are captured via the Fast Research Interface (FRI) available at the KUKA LWR. Using the suggested approach, excellent modeling is obtained for different CFs during the robot task execution. A comparison with the available CF recognition approaches is also performed and the superiority of the suggested scheme is shown. [less ▲] Detailed reference viewed: 252 (12 UL) Das T.A.L.ENT.-Schülerinnen- und Schülerportfolio; ; et al Learning material (2007) Detailed reference viewed: 75 (4 UL) Tabakkonsum von Schülern in Luxemburg / Consommation de tabac par les élèves au LuxembourgKern, Matthias Robert ; Heinz, Andreas ; Residori, Caroline et alE-print/Working paper (2018) In der HBSC-Studie 2014 wurden Fragen zum Tabakkonsum gestellt. Von den 11-12-Jährigen sind 2 % laut eigenen Angaben Raucher, in der Altersgruppe 17-18 steigt dieser Anteil auf knapp über ein Drittel. Bis ... [more ▼] In der HBSC-Studie 2014 wurden Fragen zum Tabakkonsum gestellt. Von den 11-12-Jährigen sind 2 % laut eigenen Angaben Raucher, in der Altersgruppe 17-18 steigt dieser Anteil auf knapp über ein Drittel. Bis zum Alter von 14 Jahren ist der Anteil der regelmäßigen Raucher (d.h. sie rauchen mindestens einmal pro Woche) bei Jungen und Mädchen etwa gleich hoch. In der Altersgruppe 17-18 rauchen 32 % der männlichen Jugendlichen regelmäßig, aber nur 23 % der weiblichen Jugendlichen. Im Enseignement secondaire technique ist der Anteil der regelmäßigen Raucher in allen Altersgruppen ungefähr doppelt so hoch wie im Enseignement secondaire. Die Hälfte der Raucher hat mit 14 Jahren oder noch früher mit dem Rauchen angefangen, daher sollte frühzeitig über die Gefahren des Rauchens aufgeklärt werden. [less ▲] Detailed reference viewed: 153 (16 UL) Tabellenband - Jugendbericht 2020Residori, Caroline ; Schembri, Emanuel ; Bulut, Hamid et alReport (2021) Detailed reference viewed: 41 (9 UL) Table ronde : Comment assurer l’évaluation diagnostique des compétences scolaires ?; Dierendonck, Christophe ![]() in L'évaluation des compétences en milieu scolaire et en milieu professionnel (2012) Detailed reference viewed: 92 (3 UL) Table ronde : comment faire réseau autour des archives du web ?Schafer, Valerie ![]() Scientific Conference (2021, May 17) Table ronde : comment faire réseau autour des archives du web ? Intervenants : Emmanuelle Bermès (Bibliothèque nationale de France), Dominique Cardon (medialab, Sciences Po), Stéphanie Groudiev (Campus ... [more ▼] Table ronde : comment faire réseau autour des archives du web ? Intervenants : Emmanuelle Bermès (Bibliothèque nationale de France), Dominique Cardon (medialab, Sciences Po), Stéphanie Groudiev (Campus Condorcet), Valérie Schafer (Université du Luxembourg) [less ▲] Detailed reference viewed: 35 (2 UL) Table ronde conclusive | Conclusive Round TableFickers, Andreas ![]() Speeches/Talks (2017) Detailed reference viewed: 45 (0 UL) |
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